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An ubiquitous example of a hydrogen bond is found between water molecules. In a discrete water molecule, there are two hydrogen atoms and one oxygen atom. The simplest case is a pair of water molecules with one hydrogen bond between them, which is called the water dimer and is often used as a model system. When more molecules are present, as is ...
One hydrogen bond from the Watson-Crick base pair is maintained (guanine O6 and cytosine N4) and the other occurs between guanine N7 and a protonated cytosine N3 (note that the Hoogsteen G-C base pair has two hydrogen bonds, while the Watson-Crick G-C base pair has three). [65] Figure 6: Four examples of wobble base pairs.
Top, a G.C base pair with three hydrogen bonds. Bottom, an A.T base pair with two hydrogen bonds. Non-covalent hydrogen bonds between the bases are shown as dashed lines. The wiggly lines stand for the connection to the pentose sugar and point in the direction of the minor groove.
A single bond between two atoms corresponds to the sharing of one pair of electrons. The Hydrogen (H) atom has one valence electron. Two Hydrogen atoms can then form a molecule, held together by the shared pair of electrons. Each H atom now has the noble gas electron configuration of helium (He).
In the gas phase, a single water molecule has an oxygen atom surrounded by two hydrogens and two lone pairs, and the H 2 O geometry is simply described as bent without considering the nonbonding lone pairs. [citation needed] However, in liquid water or in ice, the lone pairs form hydrogen bonds with neighboring water molecules. The most common ...
2 O describes the bonds as two sigma bonds between the central oxygen atom and the two peripheral hydrogen atoms with oxygen having two lone pairs of electrons. Valence bond theory suggests that H 2 O is sp 3 hybridized in which the 2s atomic orbital and the three 2p orbitals of oxygen are hybridized to form four new hybridized orbitals which ...
Initially, one line (representing a single bond) is drawn between each pair of connected atoms. Each bond consists of a pair of electrons, so if t is the total number of electrons to be placed and n is the number of single bonds just drawn, t−2n electrons remain to be placed. These are temporarily drawn as dots, one per electron, to a maximum ...
Base pairing: Two base pairs are produced by four nucleotide monomers, nucleobases are in blue. Guanine (G) is paired with cytosine (C) via three hydrogen bonds, in red. Adenine (A) is paired with uracil (U) via two hydrogen bonds, in red. Purine nucleobases are fused-ring molecules. Pyrimidine nucleobases are simple ring molecules.