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  2. Longest common substring - Wikipedia

    en.wikipedia.org/wiki/Longest_common_substring

    The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...

  3. Longest common subsequence - Wikipedia

    en.wikipedia.org/wiki/Longest_common_subsequence

    A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring : unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences.

  4. Generalized suffix array - Wikipedia

    en.wikipedia.org/wiki/Generalized_suffix_array

    A naive implementation would compute the largest common subsequence of all the strings in the set in (). [6] A generalized suffix array can be utilized to find the longest previous factor array, a concept central to text compression techniques and in the detection of motifs and repeats [7]

  5. de Bruijn sequence - Wikipedia

    en.wikipedia.org/wiki/De_Bruijn_sequence

    In general there are many sequences for a particular n and k but in this example it is unique, up to cycling. In combinatorial mathematics, a de Bruijn sequence of order n on a size-k alphabet A is a cyclic sequence in which every possible length-n string on A occurs exactly once as a substring (i.e., as a contiguous subsequence).

  6. Longest repeated substring problem - Wikipedia

    en.wikipedia.org/wiki/Longest_repeated_substring...

    The string spelled by the edges from the root to such a node is a longest repeated substring. The problem of finding the longest substring with at least k {\displaystyle k} occurrences can be solved by first preprocessing the tree to count the number of leaf descendants for each internal node, and then finding the deepest node with at least k ...

  7. Edit distance - Wikipedia

    en.wikipedia.org/wiki/Edit_distance

    In computational linguistics and computer science, edit distance is a string metric, i.e. a way of quantifying how dissimilar two strings (e.g., words) are to one another, that is measured by counting the minimum number of operations required to transform one string into the other. Edit distances find applications in natural language processing ...

  8. Subsequence - Wikipedia

    en.wikipedia.org/wiki/Subsequence

    The longest common subsequence of sequences 1 and 2 is: LCS (SEQ 1,SEQ 2) = CGTTCGGCTATGCTTCTACTTATTCTA. This can be illustrated by highlighting the 27 elements of the longest common subsequence into the initial sequences: SEQ 1 = A CG G T G TCG T GCTATGCT GA T G CT G ACTTAT A T G CTA SEQ 2 = CGTTCGGCTAT C G TA C G TTCTA TT CT A T G ATT T CTA A

  9. Longest palindromic substring - Wikipedia

    en.wikipedia.org/wiki/Longest_palindromic_substring

    An example string would be "abcbpbcbp" where the "Old" palindrome is "bcbpbcb" and the Center is on the second "c". The MirroredCenter is the first "c" and it has a longest palindrome of "bcb". The longest palindrome at the Center on the second "c" has to be at least that long and, in this case, is longer.