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One way to visualize the similarity between two protein or nucleic acid sequences is to use a similarity matrix, known as a dot plot. These were introduced by Gibbs and McIntyre in 1970 [1] and are two-dimensional matrices that have the sequences of the proteins being compared along the vertical and horizontal axes.
To construct a dot-matrix plot, the two sequences are written along the top row and leftmost column of a two-dimensional matrix and a dot is placed at any point where the characters in the appropriate columns match—this is a typical recurrence plot. Some implementations vary the size or intensity of the dot depending on the degree of ...
The alignment of individual motifs is then achieved with a matrix representation similar to a dot-matrix plot in a pairwise alignment. An alternative method that uses fast local alignments as anchor points or seeds for a slower global-alignment procedure is implemented in the CHAOS/DIALIGN suite. [20]
A dot plot of 50 random values from 0 to 9. The dot plot as a representation of a distribution consists of group of data points plotted on a simple scale. Dot plots are used for continuous, quantitative, univariate data. Data points may be labelled if there are few of them. Dot plots are one of the simplest statistical plots, and are suitable ...
Box plot; Bumpchart; Circle packing; Dendrograms: Circular dendrogram; Linear dendrogram; Gantt chart; Horizon graph; Line chart; Matrix Plot; Parallel coordinates; Radar chart; Sankey diagram; Scatterplots: Bubble chart; Contour plot over bubble chart; Convex hull grouping; Hexagonal binning grouping; Streamgraph (also known as Area chart ...
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Dot matrix printers, computer printers that implement dot-matrix impact printing; Dot-matrix display, a type of display device; Dot plot (bioinformatics), a display convention for illustrating the alignment of two DNA or protein sequences. Dot Matrix, a character from the animated television series ReBoot; Dot Matrix, a character from the film ...
Close-up view of dot matrix text produced by a printer Dot matrix pattern woven into fabric in 1858 using punched cards on a Jacquard loom Dot matrix-style skywriting. A dot matrix is a 2-dimensional patterned array, used to represent characters, symbols and images. Most types of modern technology use dot matrices for display of information ...