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  2. Hydrogen bond - Wikipedia

    en.wikipedia.org/wiki/Hydrogen_bond

    In a discrete water molecule, there are two hydrogen atoms and one oxygen atom. The simplest case is a pair of water molecules with one hydrogen bond between them, which is called the water dimer and is often used as a model system. When more molecules are present, as is the case with liquid water, more bonds are possible because the oxygen of ...

  3. Molecular recognition - Wikipedia

    en.wikipedia.org/wiki/Molecular_recognition

    Even for small molecules like carbohydrates, the recognition process can not be predicted or designed even assuming that each individual hydrogen bond's strength is exactly known. [26] However, as Mobley et al. [ 27 ] concluded, the accurate prediction of the molecular recognition events needs to go beyond the static snapshot of a single frame ...

  4. Ball-and-stick model - Wikipedia

    en.wikipedia.org/wiki/Ball-and-stick_model

    Double and triple bonds are usually represented by two or three curved rods, respectively, or alternately by correctly positioned sticks for the sigma and pi bonds. In a good model, the angles between the rods should be the same as the angles between the bonds , and the distances between the centers of the spheres should be proportional to the ...

  5. Molecular self-assembly - Wikipedia

    en.wikipedia.org/wiki/Molecular_self-assembly

    Molecular self-assembly is a key concept in supramolecular chemistry. [6] [7] [8] This is because assembly of molecules in such systems is directed through non-covalent interactions (e.g., hydrogen bonding, metal coordination, hydrophobic forces, van der Waals forces, pi-stacking interactions, and/or electrostatic) as well as electromagnetic interactions.

  6. Molecular model - Wikipedia

    en.wikipedia.org/wiki/Molecular_model

    Double and triple bonds use two longer flexible bonds which restrict rotation and support conventional cis/trans stereochemistry. Beever's ball and stick model of ruby (Cr-doped corundum) made with acrylic balls and stainless steel rods. However, most molecules require holes at other angles and specialist companies manufacture kits and bespoke ...

  7. Bonding in solids - Wikipedia

    en.wikipedia.org/wiki/Bonding_in_solids

    Regarding the organization of covalent bonds, recall that classic molecular solids, as stated above, consist of small, non-polar covalent molecules. The example given, paraffin wax , is a member of a family of hydrocarbon molecules of differing chain lengths, with high-density polyethylene at the long-chain end of the series.

  8. Chemical bond - Wikipedia

    en.wikipedia.org/wiki/Chemical_bond

    The figure shows methane (CH 4), in which each hydrogen forms a covalent bond with the carbon. See sigma bonds and pi bonds for LCAO descriptions of such bonding. [22] Molecules that are formed primarily from non-polar covalent bonds are often immiscible in water or other polar solvents, but much more soluble in non-polar solvents such as hexane.

  9. Hoogsteen base pair - Wikipedia

    en.wikipedia.org/wiki/Hoogsteen_base_pair

    In this manner, two nucleobases, one on each strand, can be held together by hydrogen bonds in the major groove. A Hoogsteen base pair applies the N7 position of the purine base (as a hydrogen bond acceptor) and C4 amino group (as a donor), which bind the Watson–Crick (N3–C4) face of the pyrimidine base.

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