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SageMath, a combination of more than 20 main opensource math packages and provides easy to use web interface with the help of Python; Salt, a configuration management and remote execution engine; SCons, a tool for building software; Shinken, a computer system and network monitoring software application compatible with Nagios
Some tools also support CellML, a standard used for representing physiological processes. The advantage of using standard formats is that even though a particular software application may eventually become unsupported and even unusable, the models developed by that application can be easily transferred to more modern equivalents.
Orange is an open-source software package released under GPL and hosted on GitHub.Versions up to 3.0 include core components in C++ with wrappers in Python.From version 3.0 onwards, Orange uses common Python open-source libraries for scientific computing, such as numpy, scipy and scikit-learn, while its graphical user interface operates within the cross-platform Qt framework.
Called meta-build tools, these generate configuration files for other build tools such as those listed above.. CMake – Cross-platform build tool for configuring platform-specific builds; very popoular; integrated with IDEs such as Qt Creator, [1] KDevelop and GNOME Builder [2]
Mondrian – data analysis tool using interactive statistical graphics with a link to R; Neurophysiological Biomarker Toolbox – Matlab toolbox for data-mining of neurophysiological biomarkers; OpenBUGS; OpenEpi – A web-based, open-source, operating-independent series of programs for use in epidemiology and statistics based on JavaScript and ...
AnyLogic - a multi-method simulation modeling tool for business and science. Developed by The AnyLogic Company. APMonitor - a tool for dynamic simulation, validation, and optimization of multi-domain systems with interfaces to Python and MATLAB. Arena - a flowchart-based discrete event simulation software developed by Rockwell Automation
Lightweight agent system. Manages configuration of a large number of computers using the client–server paradigm or stand-alone. Any client state which is different from the policy description is reverted to the desired state. Configuration state is specified via a declarative language. [106] CFEngine's paradigm is convergent "computer ...
The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [ 1 ] [ 4 ] [ 5 ] It contains classes to represent biological sequences and sequence annotations , and it is able to read and write to a variety of file formats.