Search results
Results from the WOW.Com Content Network
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
The draft genome of grapevine [26] is the fourth genome published for a flowering plant and the first from a fruit crop. The sequences of the genome were obtained from different types of libraries, like plasmids, fosmids and BACs. All the data were generated by paired-end sequencing of cloned insert using Sanger technology on ABI3730x1 sequencers.
PacBio and Illumina short‐reads, in combination with 10× Genomics and Bionano data (v1). A total of 949 scaffolds assembled to a final size of 656.77 Mb, with a scaffold N50 of 3.43 Mb (v1), and then further improved to seven pseudo‐chromosomes using Hi‐C sequencing data (v2; scaffold N50: 93.2 Mb, total size in chromosomes: 639.6 Mb).
MANE (Matched Annotation from the NCBI and EMBL-EBI): It is a collaborative project between NCBI and EMBL-EBI whose main goal is to define a set of transcripts and their proteins for all the protein-coding genes in the human genome. By doing that, the differences in transcripts annotation between RefSeq and Ensembl/GENCODE annotation systems ...
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC).
The BED (Browser Extensible Data) format is a text file format used to store genomic regions as coordinates and associated annotations. The data are presented in the form of columns separated by spaces or tabs. This format was developed during the Human Genome Project [1] and then adopted by other sequencing
Many plant species (especially agriculturally manipulated ones) [29] are known to have undergone large genome-wide changes through duplication of the whole genome. The rice and the wheat genomes, for example, can have 4-6 copies of whole genomes [ 29 ] ( wheat ) whereas animals typically only have 2 ( diploidy ).
GMODTools: extracts data from a Chado database into common genome bulk formats (GFF, Fasta, etc.) [5] MOD website Tripal: a web front end based on Drupal. [6] Genome Editing and Visualization Apollo: a Java application for viewing and editing genome annotations [7] [8] GBrowse: a CGI application for displaying genome annotations [9] [10]