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  2. List of alignment visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_alignment...

    Link alignment results to analysis tools (Primer design, Gel mobility and Maps, Plasmapper, siRNA design Epitope prediction), Save research logs, Create custom toolbars Accession number, GI number, PDB ID, FASTA , drag-drop from external URL from within the user interface

  3. Multiple cloning site - Wikipedia

    en.wikipedia.org/wiki/Multiple_cloning_site

    An example of a plasmid cloning vector which modifies the inserted protein is pFUSE-Fc plasmid. In order to genetically engineer insulin, the first step is to cut the MCS in the plasmid being used. [7] Once the MCS is cut, the gene for human insulin can be added making the plasmid genetically modified.

  4. Open reading frame - Wikipedia

    en.wikipedia.org/wiki/Open_reading_frame

    In molecular biology, reading frames are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames will be "open" (the "reading", however, refers to the RNA produced by transcription of the DNA and its ...

  5. Restriction map - Wikipedia

    en.wikipedia.org/wiki/Restriction_map

    A restriction map is a map of known restriction sites within a sequence of DNA. Restriction mapping requires the use of restriction enzymes . In molecular biology , restriction maps are used as a reference to engineer plasmids or other relatively short pieces of DNA, and sometimes for longer genomic DNA.

  6. Gene mapping - Wikipedia

    en.wikipedia.org/wiki/Gene_mapping

    There are two distinctive mapping approaches used in the field of genome mapping: genetic maps (also known as linkage maps) [7] and physical maps. [3] While both maps are a collection of genetic markers and gene loci, [8] genetic maps' distances are based on the genetic linkage information, while physical maps use actual physical distances usually measured in number of base pairs.

  7. Vector (molecular biology) - Wikipedia

    en.wikipedia.org/wiki/Vector_(molecular_biology)

    These plasmid are generally non-conjugative but may have many more features, notably a "multiple cloning site" where multiple restriction enzyme cleavage sites allow for the insertion of a transgene insert. The bacteria containing the plasmids can generate millions of copies of the vector within the bacteria in hours, and the amplified vectors ...

  8. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Superfast and accurate read aligners. Subread can be used to map both gDNA-seq and RNA-seq reads. Subjunc detects exon-exon junctions and maps RNA-seq reads. They employ a novel mapping paradigm named seed-and-vote. Yes Yes Yes Yes Free, GPL 3 Taipan De-novo assembler for Illumina reads Proprietary, freeware for academic and noncommercial use UGENE

  9. Cloning vector - Wikipedia

    en.wikipedia.org/wiki/Cloning_vector

    They are the standard cloning vectors and the ones most commonly used. Most general plasmids may be used to clone DNA inserts of up to 15 kb in size. One of the earliest commonly used cloning vectors is the pBR322 plasmid. Other cloning vectors include the pUC series of plasmids, and a large number of different cloning plasmid vectors are ...