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Software for the post-analysis of MASCOT, SEQUEST, Comet, XTandem, PFind, PeptidePhophet, MyriMatch, MSGF, OMSSA, MSAmanda or Percolator database search results. [82] ProteoWizard: Open source: Link library and tools that are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data ...
LOCtarget is a tool for predicting, and a database of pre-computed predictions for, sub-cellular localization of eukaryotic and prokaryotic proteins. Several methods are employed to make the predictions, including text analysis of SWISS-PROT keywords, nuclear localization signals, and the use of neural networks. (bio.tools entry) [41]
The union catalog is managed with the database management system CBS (Controlled Bibliographic Service) originally developed in the 1980s in the Netherlands and acquired by OCLC in 2002. CBS and K10plus use a custom internal data format called PICA+ but extensions of CBS exist to support MARC21 . [ 4 ]
PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools Cross-platform: GPL v2 Open Bioinformatics Foundation: Biopython: Python language toolkit Cross-platform: Biopython [2] Open Bioinformatics Foundation: BioRuby: Ruby language toolkit Linux, macOS, Windows [3] GPL ...
Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. [ 1 ] [ 2 ] Mascot is widely used by research facilities around the world. Mascot uses a probabilistic scoring algorithm for protein identification that was adapted from the MOWSE algorithm.
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses.Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]
A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene name, or keyword input. Such tools generally take a query such as a DNA, RNA, or protein sequence or ‘keyword’ and search one or more databases for information related to that sequence.
Easy Software Project management software 13.3.0 Redmine 2007 Entrance: dbEntrance Software SQL-based data exploration tool 1.3.34 Entrance Community 2007 Ext JS: Sencha Cross-browser JavaScript framework 6.7.0 Ext JS 2007 EyeOS: EyeOS Cloud-computing operating system 2.1beta EyeOS 2007 Firefox: Mozilla Corporation: Web Browser 68.0.2 Firefox ...