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  2. Cluster analysis - Wikipedia

    en.wikipedia.org/wiki/Cluster_analysis

    It is a main task of exploratory data analysis, and a common technique for statistical data analysis, used in many fields, including pattern recognition, image analysis, information retrieval, bioinformatics, data compression, computer graphics and machine learning. Cluster analysis refers to a family of algorithms and tasks rather than one ...

  3. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    Pass uses Needleman–Wunsch and Smith–Waterman algorithms, and performs alignment in 3 stages: scanning positions of seed sequences in the genome, testing the contiguous regions and finally refining the alignment. PASSion; PASTA; QPALMA predicts splice junctions supported on machine learning algorithms. In this case the training set is a set ...

  4. Louvain method - Wikipedia

    en.wikipedia.org/wiki/Louvain_method

    A worst case example of an arbitrarily badly connected community is a internally disconnected community. An internally disconnected community arises through the Louvain algorithm when a node that had been acting as a "bridge" between two groups of nodes in its community is moved to a new community, leaving the old one disconnected.

  5. Determining the number of clusters in a data set - Wikipedia

    en.wikipedia.org/wiki/Determining_the_number_of...

    The average silhouette of the data is another useful criterion for assessing the natural number of clusters. The silhouette of a data instance is a measure of how closely it is matched to data within its cluster and how loosely it is matched to data of the neighboring cluster, i.e., the cluster whose average distance from the datum is lowest. [8]

  6. Automatic clustering algorithms - Wikipedia

    en.wikipedia.org/.../Automatic_Clustering_Algorithms

    Automatic clustering algorithms are algorithms that can perform clustering without prior knowledge of data sets. In contrast with other cluster analysis techniques, automatic clustering algorithms can determine the optimal number of clusters even in the presence of noise and outlier points. [1] [needs context]

  7. k-means clustering - Wikipedia

    en.wikipedia.org/wiki/K-means_clustering

    Cluster analysis, a fundamental task in data mining and machine learning, involves grouping a set of data points into clusters based on their similarity. k -means clustering is a popular algorithm used for partitioning data into k clusters, where each cluster is represented by its centroid.

  8. Model-based clustering - Wikipedia

    en.wikipedia.org/wiki/Model-based_clustering

    Several of these models correspond to well-known heuristic clustering methods. For example, k-means clustering is equivalent to estimation of the EII clustering model using the classification EM algorithm. [8] The Bayesian information criterion (BIC) can be used to choose the best clustering model as well as the number of clusters. It can also ...

  9. Correlation clustering - Wikipedia

    en.wikipedia.org/wiki/Correlation_clustering

    For example, given nodes a,b,c such that a,b and a,c are similar while b,c are dissimilar, a perfect clustering is not possible. In such cases, the task is to find a clustering that maximizes the number of agreements (number of + edges inside clusters plus the number of − edges between clusters) or minimizes the number of disagreements (the ...