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  2. Normalization (machine learning) - Wikipedia

    en.wikipedia.org/wiki/Normalization_(machine...

    Weight normalization (WeightNorm) [18] is a technique inspired by BatchNorm that normalizes weight matrices in a neural network, rather than its activations. One example is spectral normalization , which divides weight matrices by their spectral norm .

  3. DESeq2 - Wikipedia

    en.wikipedia.org/wiki/DESeq2

    DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.

  4. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    Chipster is a user-friendly analysis software for high-throughput data. It contains over 350 analysis tools for next generation sequencing (NGS), microarray, proteomics and sequence data. Users can save and share automatic analysis workflows, and visualize data interactively using a built-in genome browser and many other visualizations.

  5. List of mass spectrometry software - Wikipedia

    en.wikipedia.org/wiki/List_of_mass_spectrometry...

    Analysis of the degree of isotope labelling with D, 13 C, 15 N or 18 O. VIPER VIPER analyzes accurate mass and chromatography retention times of LC-MS features (accurate mass and time tag approach). [95] Xcalibur Proprietary: Software by Thermo Fisher Scientific used with mass spectrometry instruments. XCMS Online (Cloud-Based) Proprietary

  6. Batch normalization - Wikipedia

    en.wikipedia.org/wiki/Batch_normalization

    In a neural network, batch normalization is achieved through a normalization step that fixes the means and variances of each layer's inputs. Ideally, the normalization would be conducted over the entire training set, but to use this step jointly with stochastic optimization methods, it is impractical to use the global information.

  7. Comparison of system dynamics software - Wikipedia

    en.wikipedia.org/wiki/Comparison_of_system...

    Interactive process simulation software with support for manufacturing, healthcare and supply chain. 2D and 3D visualization with VR capability Simantics System Dynamics: Free, Eclipse Public License (EPL) Java, Modelica: 2018 Free and open source system dynamics modelling software with stock and flow modelling, hierarchical models and array ...

  8. List of chemical process simulators - Wikipedia

    en.wikipedia.org/wiki/List_of_chemical_process...

    This is a list of software used to simulate the material and energy balances of chemical process plants. Applications for this include design studies, engineering studies, design audits, debottlenecking studies, control system check-out, process simulation, dynamic simulation, operator training simulators, pipeline management systems, production management systems, digital twins.

  9. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...