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2. BASys - Wikipedia

   en.wikipedia.org/wiki/BASys

   BASys (Bacterial Annotation System) is a freely available web server that can be used to perform automated, comprehensive annotation of bacterial genomes. [2] With the advent of next generation DNA sequencing it is now possible to sequence the complete genome of a bacterium (typically ~4 million bases) within a single day.

3. FASTA format - Wikipedia

   en.wikipedia.org/wiki/FASTA_format

   It can be downloaded with any free distribution of FASTA (see fasta20.doc, fastaVN.doc, or fastaVN.me—where VN is the Version Number). In the original format, a sequence was represented as a series of lines, each of which was no longer than 120 characters and usually did not exceed 80 characters.

4. List of alignment visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_alignment...

   FASTA, Clustal: Free, GPL 3 No Linux Terminal Official website: Ale (emacs plugin) No Yes No No GenBank, EMBL, FASTA, PHYLIP: Free, GPL: No GNU Emacs Official website: AliView 2021 No MUSCLE integrated; other programs such as MAFFT can be defined External programs such as FastTree can be called from within

5. UniProt - Wikipedia

   en.wikipedia.org/wiki/UniProt

   UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects.It contains a large amount of information about the biological function of proteins derived from the research literature.

6. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   Free, GPL2 ALLALIGN For DNA, RNA and protein molecules up to 32MB, aligns all sequences of size K or greater, MSA or within a single molecule. Similar alignments are grouped together for analysis. Automatic repetitive sequence filter. Both Local E. Wachtel 2017 Free AMAP: Sequence annealing: Both: Global: A. Schwartz and L. Pachter: 2006: BAli-Phy

7. List of RNA-Seq bioinformatics tools - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA-Seq...

   The input can be SAM, BAM, FASTA, BED files or Chromosome size file (two-column, plain text file). Visualization can be performed by genome browsers like UCSC, IGB and IGV. However, R scripts can also be used for visualization. SAMStat [15] identifies problems and reports several statistics at different phases of the process. This tool ...