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  2. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    Using DESeq2 as a framework, DEvis provides a wide variety of tools for data manipulation, visualization, and project management. DEXSeq is Bioconductor package that finds differential differential exon usage based on RNA-Seq exon counts between samples. DEXSeq employs negative binomial distribution, provides options to visualization and ...

  3. DESeq2 - Wikipedia

    en.wikipedia.org/wiki/DESeq2

    DESeq2 employs statistical methods to normalize and analyze RNA-seq data, making it a valuable tool for researchers studying gene expression patterns and regulation. It is available through the Bioconductor repository. It was first presented in 2014. [1] As of September 2023, its use has been cited over 30,000 times. [2]

  4. RNA-Seq - Wikipedia

    en.wikipedia.org/wiki/RNA-Seq

    Methods: Most tools use regression or non-parametric statistics to identify differentially expressed genes, and are either based on read counts mapped to a reference genome (DESeq2, limma, edgeR) or based on read counts derived from alignment-free quantification (sleuth, [106] Cuffdiff, [107] Ballgown [108]). [109]

  5. Canonicalization - Wikipedia

    en.wikipedia.org/wiki/Canonicalization

    Line breaks normalized to #xA on input, before parsing; Attribute values are normalized, as if by a validating processor; Character and parsed entity references are replaced; CDATA sections are replaced with their character content; The XML declaration and document type declaration are removed; Empty elements are converted to start-end tag pairs

  6. How investigators, prosecutors bungled probe of boat crash ...

    www.aol.com/investigators-prosecutors-bungled...

    A Miami Herald investigation into the boat crash that killed a 17-year-old Lourdes student reveals a deeply flawed probe as FWC investigators and prosecutors built a case against George Pino.

  7. BED (file format) - Wikipedia

    en.wikipedia.org/wiki/BED_(file_format)

    The BED (Browser Extensible Data) format is a text file format used to store genomic regions as coordinates and associated annotations. The data are presented in the form of columns separated by spaces or tabs. This format was developed during the Human Genome Project [1] and then adopted by other sequencing

  8. Elton John Reveals Which of His Own Songs Are His ... - AOL

    www.aol.com/lifestyle/elton-john-reveals-own...

    Elton John's gift may be his song, but that doesn't mean he loves them all.. During an appearance on The Late Show with Stephen Colbert on Tuesday, Dec. 17, the 77-year-old musician spoke about ...

  9. The Playlist: Week 8 fantasy basketball waiver wire pickups ...

    www.aol.com/sports/playlist-week-8-fantasy...

    The championship game will not count towards the Week 8 scoring period. 🥇 Top players for Week 7 (Dec 2- 15) Points leagues: Nikola Jokić (342.9 fantasy points)