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Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) Linux, macOS, Windows [1] Eclipse Public: The Bioclipse Project Bioconductor: R (programming language) language toolkit Linux, macOS, Windows: Artistic 2.0 Fred Hutchinson Cancer Research Center: BioJava
The third is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics which do not always perform perfectly. The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore ...
Both + Ends-free: P. Aboyoun: 2008 BioPerl dpAlign Dynamic programming: Both: Both + Ends-free: Y. M. Chan: 2003 BLASTZ, LASTZ Seeded pattern-matching: Nucleotide: Local: Schwartz et al. [18] [19] 2004,2009 CUDAlign DNA sequence alignment of unrestricted size in single or multiple GPUs Nucleotide: Local, SemiGlobal, Global: E. Sandes [20] [21 ...
Keras: François Chollet 2015 MIT license: Yes Linux, macOS, Windows: Python: Python, R: Only if using Theano as backend Can use Theano, Tensorflow or PlaidML as backends Yes No Yes Yes [20] Yes Yes No [21] Yes [22] Yes MATLAB + Deep Learning Toolbox (formally Neural Network Toolbox) MathWorks: 1992 Proprietary: No Linux, macOS, Windows: C, C++ ...
Keras is an open-source library that provides a Python interface for artificial neural networks. Keras was first independent software, then integrated into the TensorFlow library , and later supporting more.
Structure prediction can be constrained using experimental data, including SHAPE, enzymatic cleavage, and chemical modification accessibility. Graphical user interfaces are available for Windows, Mac OS X, Linux. Programs are also available for use with Unix-style text interfaces. Also, a C++ class library is available. Yes: source & binaries ...
wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...
The Standard edition adds database tools, a visual web designer, persistence tools, Spring tools, Struts and JSF tooling, and a number of other features to the basic Eclipse Java Developer profile. It competes with the Web Tools Project, which is a part of Eclipse itself, but MyEclipse is a separate project entirely and offers a different ...