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DECIPHER is a web-based resource and database of genomic variation data from analysis of patient DNA. [ 1 ] [ 2 ] [ 3 ] It documents submicroscopic chromosome abnormalities ( microdeletions and duplications ) and pathogenic sequence variants (single nucleotide variants - SNVs, Insertions, Deletions, InDels), from over 25000 patients and maps ...
DECIPHER is a software that can be used to decipher and manage biological sequences efficiently using the programming language R. Features ...
OpenML: [494] Web platform with Python, R, Java, and other APIs for downloading hundreds of machine learning datasets, evaluating algorithms on datasets, and benchmarking algorithm performance against dozens of other algorithms. PMLB: [495] A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms ...
Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
The bulge corremoval algorithm can be summarized as follows: a simple bulge is formed by two small and similar paths (P and Q) connecting the same hubs. If P is a non-branching path (h-path), then SPAdes maps every edge in P to an edge projection in Q and removes P from the graph, as a result the coverage of Q increases.
FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores.Both the sequence letter and quality score are each encoded with a single ASCII character for brevity.
C4.5 is an algorithm used to generate a decision tree developed by Ross Quinlan. [1] C4.5 is an extension of Quinlan's earlier ID3 algorithm.The decision trees generated by C4.5 can be used for classification, and for this reason, C4.5 is often referred to as a statistical classifier.
CatBoost [6] is an open-source software library developed by Yandex.It provides a gradient boosting framework which, among other features, attempts to solve for categorical features using a permutation-driven alternative to the classical algorithm. [7]