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SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM (Sequence Alignment/Map), BAM (Binary Alignment/Map) and CRAM formats, written by Heng Li.
The Security Account Manager (SAM) is a database file [1] in Windows NT, Windows 2000, Windows XP, Windows Vista, Windows 7, 8.1, 10 and 11 that stores users' passwords. It can be used to authenticate local and remote users. Beginning with Windows 2000 SP4, Active Directory authenticates remote users.
Free open source: ms-2.de: OpenMM: No No Yes Yes Yes Yes No Yes Yes High Performance MD, highly flexible, Python scriptable Free open source MIT: OpenMM: Orac: No No Yes Yes No Yes No Yes No Molecular dynamics simulation program to explore free energy surfaces in biomolecular systems at the atomic level Free open source: Orac download page ...
S-Adenosyl methionine (SAM), also known under the commercial names of SAMe, SAM-e, or AdoMet, is a common cosubstrate involved in methyl group transfers, transsulfuration, and aminopropylation. Although these anabolic reactions occur throughout the body, most SAM is produced and consumed in the liver. [ 1 ]
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Radical Formation: A "stable" radical is formed through a radical SAM mechanism in which a S-adenosyl methionine forms a 5'-deoxyadenosyl radical. Enzyme Binding: Lysine 2,3-aminomutase binds to pyridoxal phosphate (PLP). Amino Acid Binding: The amino acid (Lysine or Beta-Lysine depending on forward or reverse reactions) binds to pyridoxal ...
Representative enzymes will be mentioned for each class. Radical SAM enzymes and their mechanisms known before 2008 are summarized by Frey et al. [5] Since 2015, additional review articles on radical SAM enzymes are available, including: Advances in Radical SAM Enzymology: New Structures and Mechanisms: [11] Radical S-Adenosylmethionine Enzymes ...