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Gene length: Longer genes will have more fragments/reads/counts than shorter genes if transcript expression is the same. This is adjusted by dividing the FPM by the length of a feature (which can be a gene, transcript, or exon), resulting in the metric fragments per kilobase of feature per million mapped reads (FPKM). [90]
Sequencing technologies vary in the length of reads produced. Reads of length 20-40 base pairs (bp) are referred to as ultra-short. [2] Typical sequencers produce read lengths in the range of 100-500 bp. [3] However, Pacific Biosciences platforms produce read lengths of approximately 1500 bp. [4] Read length is a factor which can affect the results of biological studies. [5]
The ISQ symbols for the bit and byte are bit and B, respectively.In the context of data-rate units, one byte consists of 8 bits, and is synonymous with the unit octet.The abbreviation bps is often used to mean bit/s, so that when a 1 Mbps connection is advertised, it usually means that the maximum achievable bandwidth is 1 Mbit/s (one million bits per second), which is 0.125 MB/s (megabyte per ...
There are two common methods in which to construct a DNA molecular-weight size marker. [3] One such method employs the technique of partial ligation. [3] DNA ligation is the process by which linear DNA pieces are connected to each other via covalent bonds; more specifically, these bonds are phosphodiester bonds. [4]
In 2012, with cameras operating at more than 10 MHz A/D conversion rates and available optics, fluidics and enzymatics, throughput can be multiples of 1 million nucleotides/second, corresponding roughly to 1 human genome equivalent at 1x coverage per hour per instrument, and 1 human genome re-sequenced (at approx. 30x) per day per instrument ...
In telecommunications and computing, bit rate (bitrate or as a variable R) is the number of bits that are conveyed or processed per unit of time. [1]The bit rate is expressed in the unit bit per second (symbol: bit/s), often in conjunction with an SI prefix such as kilo (1 kbit/s = 1,000 bit/s), mega (1 Mbit/s = 1,000 kbit/s), giga (1 Gbit/s = 1,000 Mbit/s) or tera (1 Tbit/s = 1,000 Gbit/s). [2]
For Blu-ray discs, 1× speed is defined as 36 megabits per second (Mbit/s), which is equal to 4.5 megabytes per second (MB/s). [7] However, as the minimum required data transfer rate for Blu-ray movie discs is 54 Mbit/s, the minimum speed for a Blu-ray drive intended for commercial movie playback should be 2×. The fastest Blu-ray speed is 16×.
2 GB/s: 2012 Direct Media Interface 2.0 (DMI 2.0; ×4 link) 20 Gbit/s: 2 GB/s: 2011 PCI Express 1.0 (×8 link) [l] 20 Gbit/s: 2 GB/s: 2004 PCI Express 2.0 (×4 link) [m] 20 Gbit/s: 2 GB/s: 2007 AGP 8×: 17.066 Gbit/s: 2.133 GB/s: 2002 PCI-X DDR: 17.066 Gbit/s: 2.133 GB/s: RapidIO Gen2 4×: 20 Gbit/s: 2.5 GB/s: Sun JBus (200 MHz) 20.48 Gbit/s: 2 ...