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  2. Reaction coordinate - Wikipedia

    en.wikipedia.org/wiki/Reaction_coordinate

    An example is the complexation of two molecules. The distance between both of them is the collective variable, where the atomic positions are the individual variables x i and the reaction coordinate ξ would be the full path of association and dissociation. By applying a bias to the collective variables the simulation can be 'steered' towards ...

  3. Mean free path - Wikipedia

    en.wikipedia.org/wiki/Mean_free_path

    In physics, mean free path is the average distance over which a moving particle (such as an atom, a molecule, or a photon) travels before substantially changing its direction or energy (or, in a specific context, other properties), typically as a result of one or more successive collisions with other particles.

  4. Inelastic mean free path - Wikipedia

    en.wikipedia.org/wiki/Inelastic_mean_free_path

    Universal curve for the electron inelastic mean free path in elements based on equation (5) in. [1] If a monochromatic , primary beam of electrons is incident on a solid surface, the majority of incident electrons lose their energy because they interact strongly with matter , leading to plasmon excitation, electron-hole pair formation, and ...

  5. Path integral formulation - Wikipedia

    en.wikipedia.org/wiki/Path_integral_formulation

    The path integral formulation is a description in quantum mechanics that generalizes the stationary action principle of classical mechanics.It replaces the classical notion of a single, unique classical trajectory for a system with a sum, or functional integral, over an infinity of quantum-mechanically possible trajectories to compute a quantum amplitude.

  6. Path integral molecular dynamics - Wikipedia

    en.wikipedia.org/wiki/Path_integral_molecular...

    Path integral molecular dynamics (PIMD) is a method of incorporating quantum mechanics into molecular dynamics simulations using Feynman path integrals. In PIMD, one uses the Born–Oppenheimer approximation to separate the wavefunction into a nuclear part and an electronic part. The nuclei are treated quantum mechanically by mapping each ...

  7. Energy profile (chemistry) - Wikipedia

    en.wikipedia.org/wiki/Energy_profile_(chemistry)

    In theoretical chemistry, an energy profile is a theoretical representation of a chemical reaction or process as a single energetic pathway as the reactants are transformed into products. This pathway runs along the reaction coordinate , which is a parametric curve that follows the pathway of the reaction and indicates its progress; thus ...

  8. Linear biochemical pathway - Wikipedia

    en.wikipedia.org/wiki/Linear_biochemical_pathway

    A linear pathway can be studied in various ways. Multiple computer simulations can be run to try to understand the pathway's behavior. Another way to understand the properties of a linear pathway is to take a more analytical approach. Analytical solutions can be derived for the steady-state if simple mass-action kinetics are assumed.

  9. Optical path length - Wikipedia

    en.wikipedia.org/wiki/Optical_path_length

    The optical path difference between the paths taken by two identical waves can then be used to find the phase change. Finally, using the phase change, the interference between the two waves can be calculated. Fermat's principle states that the path light takes between two points is the path that has the minimum optical path length.