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PGF/TikZ is a pair of languages for producing vector graphics (e.g., technical illustrations and drawings) from a geometric/algebraic description, with standard features including the drawing of points, lines, arrows, paths, circles, ellipses and polygons.
Graphviz (short for Graph Visualization Software) is a package of open-source tools initiated by AT&T Labs Research for drawing graphs (as in nodes and edges, not as in bar charts) specified in DOT language scripts having the file name extension "gv". It also provides libraries for software applications to use the tools.
The GVedit tool combines a text editor and a non-interactive viewer. Most programs are part of the Graphviz package or use it internally. DOT is historically an acronym for "DAG of tomorrow", as the successor to a DAG format and a dag program which handled only directed acyclic graphs. [2]
It offers features such as vector editing, prototyping, and collaboration tools. SVG-edit is a FOSS web-based, JavaScript-driven SVG editor that works in any modern browser. Synfig Studio (also known as Synfig) is a free and open-source 2D vector graphics and timeline-based computer animation program created by Robert Quattlebaum. Synfig is ...
Social Network Analysis tool Tulip format (.tlp), GraphViz (.dot), GML, txt, adjacency matrix.tlp, .gml, GraphVis format (.dot), GML, PNG / SVG / JPEG Windows, Linux, Mac Open source: Tulip is an information visualization framework dedicated to the analysis and visualization of relational data.
yEd, a free Java-based graph editor, supports import from and export to GML. The Graphviz project includes two command-line tools (gml2gv and gv2gml) that can convert to and from the DOT file format. Wolfram Language, a general very high-level programming language, supports GML import and export.
A GraphML file consists of an XML file containing a graph element, within which is an unordered sequence of node and edge elements. Each node element should have a distinct id attribute, and each edge element has source and target attributes that identify the endpoints of an edge by having the same value as the id attributes of those endpoints.
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
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