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A wide variety of measurements can be generated for each identified cell or subcellular compartment, including morphology, intensity, and texture among others. These measurements are accessible by using built-in viewing and plotting data tools, exporting in a comma-delimited spreadsheet format, [ 9 ] or importing into a MySQL or SQLite database.
Segmentation of cells is an important sub-problem in many of the fields below (and sometimes useful on its own if the goal is only to obtain a cell count in a viability assay). The goal is to identify the boundaries of cells in a multi-cell image. This allows for processing each cell individually to measure parameters.
C/C++: No: 1999 E-Cell [68] One of the earliest attempts at a whole-cell modeling platform. C/C++: No: 1999 Gepasi [69] First GUI application that supported metabolic control analysis and parameter estimation. C/C++: Yes: 1993 Jarnac [70] First GUI based application to support scripting in systems biology modeling. Object Pascal: Yes: 2000 JSim ...
Microscope image processing is a broad term that covers the use of digital image processing techniques to process, analyze and present images obtained from a microscope. Such processing is now commonplace in a number of diverse fields such as medicine, biological research, cancer research, drug testing, metallurgy, etc. A number of ...
Cytometers are the instruments which count the blood cells in the common blood test.. Cytometry is the measurement of number and characteristics of cells.Variables that can be measured by cytometric methods include cell size, cell count, cell morphology (shape and structure), cell cycle phase, DNA content, and the existence or absence of specific proteins on the cell surface or in the ...
In addition to clinical counting of blood cells (cell diameters usually 6–10 micrometers), the Coulter counter has established itself as the most reliable laboratory method for counting a wide variety of cells, ranging from bacteria (<1 micrometer in size), fat cells (about 400 micrometers), stem cell embryoid bodies (about 900 micrometers ...
This is a list of software systems that are used for visualizing microscopy data. For each software system, the table below indicates which type of data can be displayed: EM = Electron microscopy; MG = Molecular graphics; Optical = Optical microscopy.
Translucent objects, like a living human cell, absorb and scatter small amounts of light. This makes translucent objects much easier to observe in ordinary light microscopes. Such objects do, however, induce a phase shift that can be observed using a phase contrast microscope.