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samtools view -h -b sample_sorted.bam "chr1:10-13" > tiny_sorted.bam. Extract the same reads as above, but instead of displaying them, writes them to a new bam file, tiny_sorted.bam. The -b option makes the output compressed and the -h option causes the SAM headers to be output also.
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [ 2 ] [ 3 ] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments ...
It is used along with a directory to manage files on a disk (originally only a floppy disk, and later also a hard disk). In terms of Commodore DOS ( CBM DOS ) compatible disk drives , the BAM was a data structure stored in a reserved area of the disk (its size and location varied based on the physical characteristics of the disk).
Compressed Reference-oriented Alignment Map (CRAM) is a compressed columnar file format for storing biological sequences aligned to a reference sequence, initially devised by Markus Hsi-Yang Fritz et al. [1] CRAM was designed to be an efficient reference-based alternative to the Sequence Alignment Map (SAM) and Binary Alignment Map (BAM) file ...
Changes made to the command line environment after SetLocal commands are local to the batch file. EndLocal command restores the previous settings. [17] The Call command allows subroutines within batch file. The Call command in COMMAND.COM only supports calling external batch files. File name parser extensions to the Set command are comparable ...
In computing, fc (File Compare) is a command-line program in DOS, IBM OS/2 and Microsoft Windows operating systems, that compares multiple files and outputs the differences between them. [2] [3] It is similar to the Unix commands comm, cmp and diff.
The command took the form SYS n where n is a memory location where the executable code starts. Home computer platforms typically publicised dozens of entry points to built-in routines (such as Commodore's KERNAL [10]) that were used by programmers and users to access functionality not easily accessible through BASIC.
The tool is usually useful for entering special characters. [1] It can be opened via the command-line interface or Run command dialog using the 'charmap' command.. The "Advanced view" check box can be used to inspect the character sets in a font according to different encodings (), including Unicode code ranges, to locate particular characters by their Unicode code point and to search for ...