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2. AutoDock - Wikipedia

   en.wikipedia.org/wiki/AutoDock

   PyRx provides a nice GUI for running virtual screening with AutoDock. PyRx includes a docking wizard and you can use it to run AutoDock Vina in the Cloud or HPC cluster. [25] POAP is a shell-script-based tool which automates AutoDock for virtual screening from ligand preparation to post docking analysis. [26]

3. Pyrex (programming language) - Wikipedia

   en.wikipedia.org/wiki/Pyrex_(programming_language)

   Pyrex is a programming language for creating Python modules.Its syntax is very close to Python and it makes it easy for Python programmers to write non-Python supporting code for interfacing modules in a language which is as close to Python as possible.

4. pip (package manager) - Wikipedia

   en.wikipedia.org/wiki/Pip_(package_manager)

   pip (also known by Python 3's alias pip3) is a package-management system written in Python and is used to install and manage software packages. [4] The Python Software Foundation recommends using pip for installing Python applications and its dependencies during deployment. [5]

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6. Optimization Toolbox - Wikipedia

   en.wikipedia.org/wiki/Optimization_Toolbox

   Optimization can help with fitting a model to data, where the goal is to identify the model parameters that minimize the difference between simulated and experimental data.

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8. Spyder (software) - Wikipedia

   en.wikipedia.org/wiki/Spyder_(software)

   It is an open-source cross-platform integrated development environment (IDE) for scientific programming in the Python language.Spyder integrates with a number of prominent packages in the scientific Python stack, including NumPy, SciPy, Matplotlib, pandas, IPython, SymPy and Cython, as well as other open-source software.

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