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Matthew Bonnan in 2022. Matthew Bonnan [1] is an American paleobiologist, a Professor of Biological Sciences at Stockton University, and as of 2021 a singer/songwriter.His research combines traditional descriptive and anatomical study with computer-aided morphometric analysis and modeling of vertebrate skeletons, and he is the co-discoverer of three new species of dinosaurs.
The Database of protein conformational diversity (PCDB) is a database of diversity of protein tertiary structures within protein domains as determined by X-ray crystallography. [ 1 ] [ 2 ] Proteins are inherently flexible and this database collects information on this subject for use in molecular research.
database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute
Where possible, MODs share common approaches to collect and represent biological information. For example, all MODs use the Gene Ontology (GO) [3] [4] to describe functions, processes and cellular locations of specific gene products. Projects also exist to enable software sharing for curation, visualization and querying between different MODs. [5]
3-Clause BSD License: Open Chemistry Project: BEDtools "Genome arithmetic"—manipulation of coordinate sets and the extraction of sequences from a BED file. Linux: MIT: QuinlanLab, University of Utah: Bioclipse: Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) Linux, macOS, Windows [1] Eclipse Public
free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]
Arctos [3] Specimen holdings of several natural history museums, agencies, and accessible private collections X X X X X X X X X Vertebrates, invertebrates, parasites, vascular and non-vascular plants, many with images and extensive usage data. Avibase – the World Bird Database [4] Birds, distribution, taxonomy X
The database aims to make quantitative values more easily available, to aid fields such as systems biology. The BioNumbers project performs literature-based curation of various sources. [ 1 ] It is a regularly updated online resource that contains >13,000 entries from ~1,000 distinct references. [ 2 ]