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Matthew Bonnan in 2022. Matthew Bonnan [1] is an American paleobiologist, a Professor of Biological Sciences at Stockton University, and as of 2021 a singer/songwriter.His research combines traditional descriptive and anatomical study with computer-aided morphometric analysis and modeling of vertebrate skeletons, and he is the co-discoverer of three new species of dinosaurs.
The Database of protein conformational diversity (PCDB) is a database of diversity of protein tertiary structures within protein domains as determined by X-ray crystallography. [ 1 ] [ 2 ] Proteins are inherently flexible and this database collects information on this subject for use in molecular research.
3-Clause BSD License: Open Chemistry Project: BEDtools "Genome arithmetic"—manipulation of coordinate sets and the extraction of sequences from a BED file. Linux: MIT: QuinlanLab, University of Utah: Bioclipse: Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) Linux, macOS, Windows [1] Eclipse Public
database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute
free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]
The database aims to make quantitative values more easily available, to aid fields such as systems biology. The BioNumbers project performs literature-based curation of various sources. [ 1 ] It is a regularly updated online resource that contains >13,000 entries from ~1,000 distinct references. [ 2 ]
[1] [2] They allow users to analyse results and interpret datasets, and the data they generate are increasingly used to describe less well studied species. [1] Where possible, MODs share common approaches to collect and represent biological information.
In molecular biology, MobiDB [1] [2] [3] is a curated biological database designed to offer a centralized resource for annotations of intrinsic protein disorder. Protein disorder is a structural feature characterizing a large number of proteins with prominent members known as intrinsically unstructured (or disordered) proteins.