Search results
Results from the WOW.Com Content Network
A Manhattan plot is a type of plot, usually used to display data with a large number of data-points, many of non-zero amplitude, and with a distribution of higher-magnitude values. The plot is commonly used in genome-wide association studies (GWAS) to display significant SNPs .
Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.
The top row is a series of plots using the escape time algorithm for 10000, 1000 and 100 maximum iterations per pixel respectively. The bottom row uses the same maximum iteration values but utilizes the histogram coloring method. Notice how little the coloring changes per different maximum iteration counts for the histogram coloring method plots.
These include affy (ma.plot, mva.pairs), limma (plotMA), marray (maPlot), and edgeR(maPlot) Similar "RA" plots can be generated using the raPlot function in the caroline CRAN R package. An interactive MA plot to filter genes by M, A and p-values, search by names or with a lasso, and save selected genes, is available as an R-Shiny code Enhanced ...
Even with the Manhattan-distance formulation, the individual attributes may come from different instances in the dataset; thus, the resulting median may not be a member of the input dataset. This algorithm is often confused with the k-medoids algorithm. However, a medoid has to be an actual instance from the dataset, while for the multivariate ...
Taxicab geometry can be used to assess the differences in discrete frequency distributions. For example, in RNA splicing positional distributions of hexamers, which plot the probability of each hexamer appearing at each given nucleotide near a splice site, can be compared with L1-distance. Each position distribution can be represented as a ...
Main page; Contents; Current events; Random article; About Wikipedia; Contact us; Donate
Libraries include Protovis.js, D3.js provides basic examples. D3.Parcoords.js (a D3-based library) specifically dedicated to parallel coordinates graphic creation has also been published. The Python data structure and analysis library Pandas implements parallel coordinates plotting, using the plotting library matplotlib. [13]