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ilastik [1] is a user-friendly free open source software for image classification and segmentation. No previous experience in image processing is required to run the software. Since 2018 ilastik is further developed and maintained by Anna Kreshuk's group at European Molecular Biology Laboratory.
GrabCut is an image segmentation method based on graph cuts.. Starting with a user-specified bounding box around the object to be segmented, the algorithm estimates the color distribution of the target object and that of the background using a Gaussian mixture model.
More precisely, image segmentation is the process of assigning a label to every pixel in an image such that pixels with the same label share certain characteristics. The result of image segmentation is a set of segments that collectively cover the entire image, or a set of contours extracted from the image (see edge detection).
SimpleITK is a simplified, open-source interface to the Insight Segmentation and Registration Toolkit (ITK). The SimpleITK image analysis library is available in multiple programming languages including C++, Python, R, [1] Java, C#, Lua, Ruby and Tcl.
3D Slicer (Slicer) is a free and open source software package for image analysis [1] [2] and scientific visualization. Slicer is used in a variety of medical applications, including autism , multiple sclerosis , systemic lupus erythematosus , prostate cancer , lung cancer , breast cancer , schizophrenia , orthopedic biomechanics , COPD ...
ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning ...
The random walker algorithm is an algorithm for image segmentation.In the first description of the algorithm, [1] a user interactively labels a small number of pixels with known labels (called seeds), e.g., "object" and "background".
GrowCut is an interactive segmentation algorithm. It uses Cellular Automaton as an image model. Automata evolution models segmentation process. Each cell of the automata has some label (in case of binary segmentation - 'object', 'background' and 'empty'). During automata evolution some cells capture their neighbours, replacing their labels.
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