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Phylogenetic inference and data visualization for allelic/SNP sequences profiles using Minimum Spanning Trees: All [29] SplitsTree: Software for viewing trees, cladograms, NeighborNets, and other graphs All [30] TreeDyn Open-source software for tree manipulation and annotation allowing incorporation of meta information: All [31] Treevolution
Tree-sitter parsers have been written for these languages and many others. [11] GitHub uses Tree-sitter to support in-browser symbolic code navigation in Git repositories. [12] Tree-sitter uses a GLR parser, a type of LR parser. [13] [14] [12] Tree-sitter was originally developed by GitHub for use in the Atom text editor, where it was first ...
Fast ML tree reconstruction, bootstrap analysis, model selection, hypothesis testing, tree calibration, tree manipulation and visualization, computation of sitewise rates, sequence simulation, many models of evolution (DNA, protein, rRNA, mixed protein, user-definable), GUI and scripting language: Maximum likelihood, distances, and others
Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx: Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments. Includes MSApad, MSA comparator, MSA reconstruction tool, FASTA generator and MSA ID matrix calculator
The OneZoom Tree of Life. The OneZoom Tree of Life Explorer is a web-based phylogenetic tree software. It aims to map the evolutionary connection of all known life. As of 2023 it includes over 2.2 million species. [1] [2]
TortoiseGit is a Git revision control client, implemented as a Windows shell extension and based on TortoiseSVN. It is free software released under the GNU General Public License. In Windows Explorer, besides showing context menu items for Git commands, TortoiseGit provides icon overlays that indicate the status of Git working trees and files.
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.
In information visualization and computing, treemapping is a method for displaying hierarchical data using nested figures, usually rectangles. Treemaps display hierarchical (tree-structured) data as a set of nested rectangles. Each branch of the tree is given a rectangle, which is then tiled with smaller rectangles representing sub-branches.