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In viruses and bacteriophages, the DNA or RNA is surrounded by a protein capsid, sometimes further enveloped by a lipid membrane.Double-stranded DNA is stored inside the capsid in the form of a spool, which can have different types of coiling leading to different types of liquid-crystalline packing.
In nature, DNA can form three structures, A-, B-, and Z-DNA. A- and B-DNA are very similar, forming right-handed helices, whereas Z-DNA is a left-handed helix with a zig-zag phosphate backbone. Z-DNA is thought to play a specific role in chromatin structure and transcription because of the properties of the junction between B- and Z-DNA.
The organization of DNA presents a remarkable biological challenge: human DNA can reach 2 meters [1] and is packed into the nucleus with the diameter of 5-20 µm. [2] At the same time, the critical cell processes involve complex processes on highly compacted DNA, such as transcription, replication, recombination, DNA repair, and cell division.
General model for duplication of heterochromatin during cell division Microscopy of heterochromatic versus euchromatic nuclei ().. Heterochromatin has been associated with several functions, from gene regulation to the protection of chromosome integrity; [13] some of these roles can be attributed to the dense packing of DNA, which makes it less accessible to protein factors that usually bind ...
Euchromatin (also called "open chromatin") is a lightly packed form of chromatin (DNA, RNA, and protein) that is enriched in genes, and is often (but not always) under active transcription. Euchromatin stands in contrast to heterochromatin, which is tightly packed and less accessible for transcription. 92% of the human genome is euchromatic. [1]
The presence of this functional group causes the helix to mostly take the A-form geometry, [11] although in single strand dinucleotide contexts, RNA can rarely also adopt the B-form most commonly observed in DNA. [12] The A-form geometry results in a very deep and narrow major groove and a shallow and wide minor groove. [13]
Many regions of the DNA are transcribed with RNA as the functional form: rRNA: Ribosomal RNA are used in the ribosome. tRNA: Transfer RNA are used in the translation process by bringing amino acids to the ribosome. snRNA: Small nuclear RNA are used in spliceosomes to help the processing of pre-mRNA. gRNA: Guide RNA are used in RNA editing.
A-DNA, is a form of the DNA duplex observed under dehydrating conditions. It is shorter and wider than B-DNA. RNA adopts this double helical form, and RNA-DNA duplexes are mostly A-form, but B-form RNA-DNA duplexes have been observed. [14] In localized single strand dinucleotide contexts, RNA can also adopt the B-form without pairing to DNA. [15]