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The "second-order cone" in SOCP arises from the constraints, which are equivalent to requiring the affine function (+, +) to lie in the second-order cone in +. [ 1 ] SOCPs can be solved by interior point methods [ 2 ] and in general, can be solved more efficiently than semidefinite programming (SDP) problems. [ 3 ]
The constraints belong to two subsets from a biological perspective; boundary constraints that limit nutrient uptake/excretion and internal constraints that limit the flux through reactions within the organism. In mathematical terms, the application of constraints can be considered to reduce the solution space of the FBA model.
In LP, the objective and constraint functions are all linear. Quadratic programming are the next-simplest. In QP, the constraints are all linear, but the objective may be a convex quadratic function. Second order cone programming are more general. Semidefinite programming are more general. Conic optimization are even more general - see figure ...
There are two main relaxations of QCQP: using semidefinite programming (SDP), and using the reformulation-linearization technique (RLT). For some classes of QCQP problems (precisely, QCQPs with zero diagonal elements in the data matrices), second-order cone programming (SOCP) and linear programming (LP) relaxations providing the same objective value as the SDP relaxation are available.
Examples of include the positive orthant + = {:}, positive semidefinite matrices +, and the second-order cone {(,): ‖ ‖}. Often f {\displaystyle f\ } is a linear function, in which case the conic optimization problem reduces to a linear program , a semidefinite program , and a second order cone program , respectively.
The approach based on optimality models in biology is sometimes called optimality theory. [1] Optimal behavior is defined as an action that maximizes the difference between the costs and benefits of that decision. Three primary variables are used in optimality models of behavior: decisions, currency, and constraints. [2]
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The order of differencing can be reversed for the time step (i.e., forward/backward followed by backward/forward). For nonlinear equations, this procedure provides the best results. For linear equations, the MacCormack scheme is equivalent to the Lax–Wendroff method .