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GraphML is an XML-based file format for graphs. The GraphML file format results from the joint effort of the graph drawing community to define a common format for exchanging graph structure data. It uses an XML-based syntax and supports the entire range of possible graph structure constellations including directed, undirected, mixed graphs ...
Graph-tool, a free Python module for manipulation and statistical analysis of graphs. NetworkX , an open source Python library for studying complex graphs. Tulip (software) is a free software in the domain of information visualisation capable of manipulating huge graphs (with more than 1.000.000 elements).
Graphviz (short for Graph Visualization Software) is a package of open-source tools initiated by AT&T Labs Research for drawing graphs (as in nodes and edges, not as in bar charts) specified in DOT language scripts having the file name extension "gv". It also provides libraries for software applications to use the tools.
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv or .dot filename extension — .gv is preferred, to avoid confusion with the .dot extension used by versions of Microsoft Word before 2007.
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graph-tool is a Python module for manipulation and statistical analysis of graphs (AKA networks).The core data structures and algorithms of graph-tool are implemented in C++, making extensive use of metaprogramming, based heavily on the Boost Graph Library. [1]
You are free: to share – to copy, distribute and transmit the work; to remix – to adapt the work; Under the following conditions: attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made.
The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. [1] [2] It has been prepared from diffusion MRI datasets of the Human Connectome Project into a reference connectome (or brain graph), which can be downloaded in CSV and GraphML formats and visualized on the site in 3D.