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An RNA secondary structure prediction software based on feature-rich trained scoring models. No: sourcecode webserver [4] CONTRAfold: Secondary structure prediction method based on conditional log-linear models (CLLMs), a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. No
List of protein structure prediction software; Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel ...
Taverna is an open source and domain-independent Workflow Management System – a suite of tools used to design and execute scientific workflows and aid in silico experimentation. TCW is a Transcriptome Computational Workbench. TRAPLINE a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation.
Serratus is a large scale viroinformatics platform for uncovering the total genetic diversity of Earth's virome.Originating with the goal of uncovering novel coronaviruses [1] that may have been incidentally sequenced by other researchers, the project expanded to encompass all RNA viruses, those which encode a viral RNA-dependent RNA polymerase (RdRp).
Molecular design software; Molecule editor; Quantum chemistry computer programs; List of molecular graphics systems; List of protein structure prediction software; List of sequence alignment software; List of gene prediction software; List of RNA structure prediction software; Comparison of software for molecular mechanics modeling
Software Collaborative software Issue tracking system Scheduling Project portfolio management Resource management Document management Workflow system Reporting and analyses 24SevenOffice: Yes Yes Yes Yes Yes Yes Yes Yes AnyChart (AnyGantt) Yes No Yes Yes Yes No Yes Yes Apache Allura: Yes Yes No Yes Yes Yes No No Apache OFBiz: Unknown No Yes ...
Automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences Eukaryotes [1] FragGeneScan: Predicting genes in complete genomes and sequencing Reads: Prokaryotes, Metagenomes [2] ATGpr: Identifies translational initiation sites in cDNA sequences: Human [3] Prodigal
Software. Model-Builder: Interactive (GUI-based) software to build, simulate, and analyze ODE models. GLEaMviz Simulator: Enables simulation of emerging infectious diseases spreading across the world. STEM: Open source framework for Epidemiological Modeling available through the Eclipse Foundation.