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Proprietary, free academic use, source code Beckman Institute: NWChem: No No Yes Yes No No Yes No No High-performance computational chemistry software, includes quantum mechanics, molecular dynamics and combined QM-MM methods Free open source, Educational Community License version 2.0 NWChem: Protein Local Optimization Program: No Yes Yes Yes ...
List of open-source healthcare software; List of biomedical cybernetics software; List of freeware health software; List of genetic engineering software; List of molecular graphics systems; List of systems biology modelling software; Comparison of software for molecular mechanics modeling; List of proprietary bioinformatics software
First GUI based application to support scripting in systems biology modeling. Object Pascal: Yes: 2000 JSim [71] First Java-based systems biology modeling platform: Java: Yes: 2003 MetaMod [72] One of the first PC-based systems biology simulators: BBC Micro: No: 1986 MetaModel [73] Early PC-based systems biology simulator: Turbo Pascal 5.0: No ...
Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel analysis software; List of mass spectrometry software
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language , but does contain contributions in other programming languages.
The results can be displayed on-line, or they can be downloaded to the user's computer in a wide variety of export formats. The Virtual Cell license allows free access to all members of the scientific community. [6] Users may save their models in the VCell DataBase, which is maintained on servers at U. Connecticut.
Qalculate! is an arbitrary precision cross-platform software calculator. [9] It supports complex mathematical operations and concepts such as derivation, integration, data plotting, and unit conversion. It is a free and open-source software released under GPL v2.
Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern comparative analyses or population genetics, while others do non-phylogenetic multivariate analysis.