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2. Foldit - Wikipedia

   en.wikipedia.org/wiki/Foldit

   Prof. David Baker, a protein research scientist at the University of Washington, founded the Foldit project.Seth Cooper was the lead game designer. Before starting the project, Baker and his laboratory coworkers relied on another research project named Rosetta [5] to predict the native structures of various proteins using special computer protein structure prediction algorithms.

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4. Comparison of software for molecular mechanics modeling

   en.wikipedia.org/wiki/Comparison_of_software_for...

   Comprehensive life science modeling and simulation suite of applications focused on optimizing drug discovery process: small molecule simulations, QM-MM, pharmacophore modeling, QSAR, protein-ligand docking, protein homology modeling, sequence analysis, protein-protein docking, antibody modeling, etc. Proprietary, trial available

5. List of protein structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_protein_structure...

   Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.

6. Avogadro (software) - Wikipedia

   en.wikipedia.org/wiki/Avogadro_(software)

   Molecule builder-editor for Windows, Linux, Unix, and macOS. All source code is licensed under the GNU General Public License (GPL) version 2. Supported languages include: Chinese, English, French, German, Italian, Russian, Spanish, and Polish. Supports multi-threaded rendering and computation.

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8. Peptide library - Wikipedia

   en.wikipedia.org/wiki/Peptide_library

   A peptide library is a tool for studying proteins.Peptide libraries typically contain a large number of peptides that have a systematic combination of amino acids.Usually, solid phase synthesis, e.g. resin as a flat surface or beads, is used for peptide library generation.

9. List of computer simulation software - Wikipedia

   en.wikipedia.org/wiki/List_of_computer...

   samadii - Computer-aided-engineering-based simulation software designed to run simulations such as solid particles, high vacuum systems gas-flow environments, plasma, and electromagnetic simulations. Ship Simulator - a vehicle simulation computer game by VSTEP which simulates maneuvering various ships in different environments.