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NEUMA is a tool to estimate RNA abundances using length normalization, based on uniquely aligned reads and mRNA isoform models. NEUMA uses known transcriptome data available in databases like RefSeq. NOISeq NOISeq is a non-parametric approach for the identification of differentially expressed genes from count data or previously normalized count ...
DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
Methods: Most tools use regression or non-parametric statistics to identify differentially expressed genes, and are either based on read counts mapped to a reference genome (DESeq2, limma, edgeR) or based on read counts derived from alignment-free quantification (sleuth, [106] Cuffdiff, [107] Ballgown [108]). [109]
Line breaks normalized to #xA on input, before parsing; Attribute values are normalized, as if by a validating processor; Character and parsed entity references are replaced; CDATA sections are replaced with their character content; The XML declaration and document type declaration are removed; Empty elements are converted to start-end tag pairs
In database management, an aggregate function or aggregation function is a function where multiple values are processed together to form a single summary statistic. (Figure 1) Entity relationship diagram representation of aggregation. Common aggregate functions include: Average (i.e., arithmetic mean) Count; Maximum; Median; Minimum; Mode ...
Out of all the mashed potato mistakes you can make, adding too much liquid to your spuds is sure to ruin your day. After all, nobody wants to take a scoop of soupy mashed potatoes! But what if you ...
In another usage in statistics, normalization refers to the creation of shifted and scaled versions of statistics, where the intention is that these normalized values allow the comparison of corresponding normalized values for different datasets in a way that eliminates the effects of certain gross influences, as in an anomaly time series. Some ...
In statistics, the Q-function is the tail distribution function of the standard normal distribution. [ 1 ] [ 2 ] In other words, Q ( x ) {\displaystyle Q(x)} is the probability that a normal (Gaussian) random variable will obtain a value larger than x {\displaystyle x} standard deviations.