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An open reading frame (ORF) is a reading frame that has the potential to be transcribed into RNA and translated into protein. It requires a continuous sequence of DNA which may include a start codon, through a subsequent region which has a length that is a multiple of 3 nucleotides, to a stop codon in the same reading frame.
The ORF Finder (Open Reading Frame Finder) [16] is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes.
Another form of translational regulation in eukaryotes comes from unique elements on the 5′ UTR called upstream open reading frames (uORF). These elements are fairly common, occurring in 35–49% of all human genes. [17] A uORF is a coding sequence located in the 5′ UTR located upstream of the coding sequences initiation site.
In literary criticism, close reading is the careful, sustained interpretation of a brief passage of a text. A close reading emphasizes the single and the particular over the general, via close attention to individual words, the syntax, the order in which the sentences unfold ideas, as well as formal structures.
Slippery sequences can potentially make the reading ribosome "slip" and skip a number of nucleotides (usually only 1) and read a completely different frame thereafter. In programmed −1 ribosomal frameshifting, the slippery sequence fits a X_XXY_YYH motif, where XXX is any three identical nucleotides (though some exceptions occur), YYY ...
n/a Ensembl ENSG00000211689 n/a UniProt Q0VGM3 n/a RefSeq (mRNA) NM_001003799 NM_001003806 n/a RefSeq (protein) NP_001003806.1 n/a Location (UCSC) Chr 7: 38.26 – 38.27 Mb n/a PubMed search n/a Wikidata View/Edit Human TCR gamma alternate reading frame protein, also known as TARP, is a human gene. In some non- lymphoid tissues, the unrearranged T cell receptor gamma (TRG@) locus is expressed ...
The evolutionarily constrained open reading frame is found on a bicistronic transcript which has a downstream ORF encoding the small nuclear ribonucleoprotein polypeptide N. The upstream coding region utilizes the first three exons of the transcript, a region that has been identified as an imprinting center.
ORF1a is the first open reading frame at the 5' end of the genome. Together ORF1ab occupies about two thirds of the genome, with the remaining third at the 3' end encoding the structural proteins and accessory proteins. [1] [2] [3] It is translated from a 5' capped RNA by cap-dependent translation. [1]
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related to: closed reading frame