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The eukaryotic SECIS element includes non-canonical A-G base pairs, which are uncommon in nature, but are critically important for correct SECIS element function. Although the eukaryotic, archaeal and bacterial SECIS elements each share a general hairpin structure, they are not alignable, e.g. an alignment-based scheme to recognize eukaryotic ...
The motion of water molecules at room temperature and their transient interactions with each other. Ball-and-stick models can be physical artifacts or virtual computer models. The former are usually built from molecular modeling kits, consisting of a number of coil springs or plastic or wood sticks, and a number of plastic balls with pre ...
In chemistry, a trigonal pyramid is a molecular geometry with one atom at the apex and three atoms at the corners of a trigonal base, resembling a tetrahedron (not to be confused with the tetrahedral geometry). When all three atoms at the corners are identical, the molecule belongs to point group C 3v.
Several of the CPK colors refer mnemonically to colors of the pure elements or notable compound. For example, hydrogen is a colorless gas, carbon as charcoal, graphite or coke is black, sulfur powder is yellow, chlorine is a greenish gas, bromine is a dark red liquid, iodine in ether is violet, amorphous phosphorus is red, rust is dark orange-red, etc.
Assignment of E and Z isomerism based on group priority. Diastereomers are distinct molecular configurations that are a broader category. [3] They usually differ in physical characteristics as well as chemical properties. If two molecules with more than one chiral centre differ in one or more (but not all) centres, they are diastereomers.
Diatomic molecules consist of a bond between only two atoms. They can be broken into two categories: homonuclear and heteronuclear. A homonuclear diatomic molecule is one composed of two atoms of the same element. Examples are H 2, O 2, and N 2. A heteronuclear diatomic molecule is composed of two atoms of two different elements.
The ribose zipper is an RNA tertiary structural element in which two RNA chains are held together by hydrogen bonding interactions involving the 2’OH of ribose sugars on different strands. The 2'OH can behave as both hydrogen bond donor and acceptor, which allows formation of bifurcated hydrogen bonds with another 2’ OH.
The definitions of hydrogen bond donors and acceptors used to apply Lipinski's Rule of Five [6] are easily coded in SMARTS. Donors are defined as nitrogen or oxygen atoms that have at least one directly bonded hydrogen atom: [N,n,O;!H0] or [#7,#8;!H0] (aromatic oxygen cannot have a bonded hydrogen) Acceptors are defined as nitrogen or oxygen: