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  2. Dendrogram - Wikipedia

    en.wikipedia.org/wiki/Dendrogram

    A dendrogram of the Tree of Life. This phylogenetic tree is adapted from Woese et al. rRNA analysis. [3] The vertical line at bottom represents the last universal common ancestor (LUCA). Heatmap of RNA-Seq data showing two dendrograms in the left and top margins. A dendrogram is a diagram representing a tree. This diagrammatic representation is ...

  3. Lineage (evolution) - Wikipedia

    en.wikipedia.org/wiki/Lineage_(evolution)

    Lineages are typically visualized as subsets of a phylogenetic tree. A lineage is a single line of descent or linear chain within the tree, while a clade is a (usually branched) monophyletic group, containing a single ancestor and all its descendants. [3] Phylogenetic trees are typically created from DNA, RNA or protein sequence data. Apart ...

  4. Phylogenetic tree - Wikipedia

    en.wikipedia.org/wiki/Phylogenetic_tree

    The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).

  5. Clade - Wikipedia

    en.wikipedia.org/wiki/Clade

    The science that tries to reconstruct phylogenetic trees and thus discover clades is called phylogenetics or cladistics, the latter term coined by Ernst Mayr (1965), derived from "clade". The results of phylogenetic/cladistic analyses are tree-shaped diagrams called cladograms ; they, and all their branches, are phylogenetic hypotheses.

  6. Horizontal gene transfer in evolution - Wikipedia

    en.wikipedia.org/wiki/Horizontal_gene_transfer...

    The uncertainty of any inferred phylogenetic tree based on a single gene can be resolved by using several common genes or even evidence from whole genomes. [12] One such approach, sometimes called 'multi-locus typing', has been used to deduce phylogenic trees for organisms that exchange genes, such as meningitis bacteria.

  7. Outgroup (cladistics) - Wikipedia

    en.wikipedia.org/wiki/Outgroup_(cladistics)

    A simple cladogram showing the evolutionary relationships between four species: A, B, C, and D. Here, Species A is the outgroup, and Species B, C, and D form the ingroup. In cladistics or phylogenetics, an outgroup [1] is a more distantly related group of organisms that serves as a reference group when determining the evolutionary relationships of the ingroup, the set of organisms under study ...

  8. Phylogenetic bracketing - Wikipedia

    en.wikipedia.org/wiki/Phylogenetic_bracketing

    Phylogenetic bracketing is a method of inference used in biological sciences. It is used to infer the likelihood of unknown traits in organisms based on their position in a phylogenetic tree. One of the main applications of phylogenetic bracketing is on extinct organisms, known only from fossils, going back to the last universal common ancestor ...

  9. Phylogenomics - Wikipedia

    en.wikipedia.org/wiki/Phylogenomics

    Phylogenomics is the intersection of the fields of evolution and genomics. [1] The term has been used in multiple ways to refer to analysis that involves genome data and evolutionary reconstructions. [2] It is a group of techniques within the larger fields of phylogenetics and genomics.