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The Balanophoraceae plastid code (not shown on web) [4] [5] The Cephalodiscidae mitochondrial code; The Enterosoma code [3] The Peptacetobacter code [3] The Anaerococcus and Onthovivens code [3] The Absconditabacterales code [3] The alternative translation tables (2 to 37) involve codon reassignments that are recapitulated in the DNA and RNA ...
[2] [3] The mRNA sequence is determined by the sequence of genomic DNA. [4] In this context, the standard genetic code is referred to as 'translation table 1' among other tables. [3] It can also be represented in a DNA codon table. The DNA codons in such tables occur on the sense DNA strand and are arranged in a 5 ′-to-3 ′ direction.
Axes 1, 2, 3 are the first, second, and third positions in the codon. The 20 amino acids and stop codons (X) are shown in single letter code. Degeneracy is the redundancy of the genetic code. This term was given by Bernfield and Nirenberg. The genetic code has redundancy but no ambiguity (see the codon tables below for
The two other start codons listed by table 1 (GTG and TTG) are rare in eukaryotes. [3] Prokaryotes have less strigent start codon requirements; they are described by NCBI table 11 . B ^ ^ ^ The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner [ 4 ] and in a historical ...
In bioinformatics and biochemistry, the FASTA format is a text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented using single-letter codes. The format allows for sequence names and comments to precede the sequences.
This is the standard genetic code (NCBI table 1), in amino acid→codon form. By default it is the DNA code; for the RNA code (using Uracil rather than Thymine), add template parameter "T=U". Also listed are the compressed codon forme, using IUPAC nucleic acid notation. It's referenced in a couple of places, so have a single master copy.
By convention, the coding strand is the strand used when displaying a DNA sequence. It is presented in the 5' to 3' direction. Wherever a gene exists on a DNA molecule, one strand is the coding strand (or sense strand), and the other is the noncoding strand (also called the antisense strand, [3] anticoding strand, template strand or transcribed ...
Prokaryotes have less strigent start codon requirements; they are described by NCBI table 11. B ^ ^ ^ The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner [4] and in a historical article by Bob Edgar. [5] As in the standard code, initiation is most efficient at AUG.
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