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2. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   Combines DNA and Protein alignment, by back translating the protein alignment to DNA. DNA/Protein (special) Local or global: Wernersson and Pedersen: 2003 (newest version 2005) SAGA Sequence alignment by genetic algorithm: Protein: Local or global: C. Notredame et al. 1996 (new version 1998) SAM Hidden Markov model: Protein: Local or global: A ...

3. List of alignment visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_alignment...

   The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.

4. Hemoglobin - Wikipedia

   en.wikipedia.org/wiki/Hemoglobin

   Protein alignment of human hemoglobin proteins, alpha, beta, and delta subunits respectively. The alignments were created using UniProt's alignment tool available online. Variations in hemoglobin sequences, as with other proteins, may be adaptive.

5. UTOPIA (bioinformatics tools) - Wikipedia

   en.wikipedia.org/wiki/UTOPIA_(bioinformatics_tools)

   UTOPIA (User-friendly Tools for Operating Informatics Applications) is a suite of free tools for visualising and analysing bioinformatics data. Based on an ontology-driven data model, it contains applications for viewing and aligning protein sequences, rendering complex molecular structures in 3D, and for finding and using resources such as web services and data objects.

6. MUSCLE (alignment software) - Wikipedia

   en.wikipedia.org/wiki/MUSCLE_(alignment_software)

   MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is a computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was published by Robert C. Edgar in two papers in 2004. The first paper, published in Nucleic Acids Research, introduced the sequence alignment algorithm ...

7. Structural alignment software - Wikipedia

   en.wikipedia.org/wiki/Structural_alignment_software

   Protein structure alignment and visualization of structural similarities; alignment of multiprotein complexes: Cα: Pair: No: server download: M. Sippl & M. Wiederstein: 2012 SSGS Secondary Structure Guided Superimposition: Ca: Pair: No: site: G. Wainreb et al. 2006 Matchprot Comparison of protein structures by growing neighborhood alignments ...

8. BLAT (bioinformatics) - Wikipedia

   en.wikipedia.org/wiki/BLAT_(bioinformatics)

   The alignment tools of the time were not capable of performing these operations in a manner that would allow a regular update of the human genome assembly. Compared to pre-existing tools, BLAT was ~500 times faster with performing mRNA / DNA alignments and ~50 times faster with protein /protein alignments.

9. Protein function prediction - Wikipedia

   en.wikipedia.org/wiki/Protein_function_prediction

   A part of a multiple sequence alignment of four different hemoglobin protein sequences. Similar protein sequences, usually indicate shared functions. Proteins of similar sequence are usually homologous [5] and thus have a similar function.