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The NEXUS format also allows the storage of data that can facilitate analyses, such as sets of characters or taxa. Many popular phylogenetic programs, including PAUP*, [2] MrBayes, [3] Mesquite, [4] MacClade, [5] and SplitsTree, [6] use this format. Nexus file names typically have the extension .nxs or .nex.
BioSamples (BioSD) is a database at European Bioinformatics Institute for the information about the biological samples used in sequencing. [1]It stores submitter-supplied metadata about the biological materials from which data stored in the National Center for Biotechnology Information’s (NCBI) primary data archives are derived.
The GDF format is often used in brain–computer interface research. [4] [5] [6] However, since GDF provides a superset of features from many different file formats, it could be also used for many other domains. The free and open source software BioSig library provides implementations for reading and writing of GDF in GNU Octave/MATLAB and C ...
Biological data refers to a compound or information derived from living organisms and their products. A medicinal compound made from living organisms, such as a serum or a vaccine, could be characterized as biological data. Biological data is highly complex when compared with other forms of data.
NeXus is a data format for experimental science that is commonly used in the neutron, x-ray, and muon scientific communities. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of scientific data.
Ensembl Genomes: provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform) FlyBase: genome of the model organism Drosophila melanogaster; Gene Disease Database
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [2] [3] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments. [4]
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. [1] It is a free and open standard with widespread software support and a community of users and developers.