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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute
The ConsensusPathDB is a molecular functional interaction database, integrating information on protein interactions, genetic interactions signaling, metabolism, gene regulation, and drug-target interactions in humans. ConsensusPathDB currently (release 30) includes such interactions from 32 databases. [1]
Therapeutic Targets Database Zhejiang University: drugs and targets SMILES InChI CAS PubChem "TTD". 37,316 T3DB Toxin and Toxin-Target Database Toxic Exposome Database. University of Alberta: toxins and toxin targets T3D "T3DB". 3,678 UniChem EMBL-EBI pointers to existing chemicals; indexes 41 databases [12] Structure; StdInChI; links to databases
Graph-based access control (GBAC) is a declarative way to define access rights, task assignments, recipients and content in information systems. Access rights are granted to objects like files or documents, but also business objects such as an account. GBAC can also be used for the assignment of agents to tasks in workflow environments.
While at Los Alamos, he was one of the developers of the GenBank database of all publicly available nucleotide sequences and their protein translations. [4] [7] Kanehisa joined Kyoto University as an associate professor in 1985, becoming a professor in 1987. [6] In 1995, Kanehisa started the KEGG (Kyoto Encyclopedia of Genes and Genomes ...
A web interface is available to access the data and to give a fast overview of the proteins and their interactions. A plug-in for cytoscape to use STRING data is available. Another possibility to access data STRING is to use the application programming interface (API) by constructing a URL that contain the request.
It is part of the AgBase database of curated, publicly accessible suite of computational tools for GO annotation and analysis. [12] Following annotation, KEGG (Kyoto Encyclopedia of Genes and Genomes) enables visualization of metabolic pathways and molecular interaction networks captured in the transcriptome.