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A consensus logo is a simplified variation of a sequence logo that can be embedded in text format. Like a sequence logo, a consensus logo is created from a collection of aligned protein or DNA/RNA sequences and conveys information about the conservation of each position of a sequence motif or sequence alignment [1] [4].
PWMs are often represented graphically as sequence logos.. A position weight matrix (PWM), also known as a position-specific weight matrix (PSWM) or position-specific scoring matrix (PSSM), is a commonly used representation of motifs (patterns) in biological sequences.
The NCBI defined a standard for the unique identifier used for the sequence (SeqID) in the header line. This allows a sequence that was obtained from a database to be labelled with a reference to its database record. The database identifier format is understood by the NCBI tools like makeblastdb and table2asn. The following list describes the ...
A DNA sequence motif represented as a sequence logo for the LexA-binding motif.. In biology, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and usually assumed to be related to biological function of the macromolecule.
Mscgen (short for MSC generator) is a software tool for drawing message sequence charts [1] from a simple to manage text-based source file. Rendered charts can be output in PNG, SVG and PostScript, with hyperlink information in ismap format.
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An infinite sequence of real numbers (in blue). This sequence is neither increasing, decreasing, convergent, nor Cauchy. It is, however, bounded. In mathematics, a sequence is an enumerated collection of objects in which repetitions are allowed and order matters. Like a set, it contains members (also called elements, or terms).
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