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FreeSurfer contains a set of programs with a common focus of analyzing magnetic resonance imaging (MRI) scans of brain tissue. It is an important tool in functional brain mapping and contains tools to conduct both volume based and surface based analysis. [ 4 ]
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity.. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script.
MONAI provides a robust suite of libraries, tools, and Software Development Kits (SDKs) that encompass the entire process of building medical imaging applications. It offers a comprehensive range of resources to support every stage of developing Artificial intelligence (AI) solutions in the field of medical imaging, from initial annotation (MONAI Label), [2] through models development and ...
The simplest approach is to model medical images as deformed versions of a single template image. For example, anatomical MRI brain scans are often mapped to the MNI template [35] as to represent all the brain scans in common coordinates. The main drawback of a single-template approach is that if there are significant differences between the ...
Structural MRI images Human Macroscopic MRI datasets Healthy and Alzheimer's disease: Yes [4] Big Brain 3D reconstruction of complete brain from cell-body stained histology sections at 20 micron isotropic resolution Human Microscopic Images Healthy No [5] BIRN fMRI and MRI data fMRI, MRI scans and atlases for human and mouse brains Mouse, Human
Amira (ah-MEER-ah) is a software platform for visualization, processing, and analysis of 3D and 4D data. It is being actively developed by Thermo Fisher Scientific in collaboration with the Zuse Institute Berlin (ZIB), and commercially distributed by Thermo Fisher Scientific — together with its sister software Avizo.