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In computer science, a substring index is a data structure which gives substring search in a text or text collection in sublinear time. Once constructed from a document or set of documents, a substring index can be used to locate all occurrences of a pattern in time linear or near-linear in the pattern size, with no dependence or only logarithmic dependence on the document size.
The variable z is used to hold the length of the longest common substring found so far. The set ret is used to hold the set of strings which are of length z. The set ret can be saved efficiently by just storing the index i, which is the last character of the longest common substring (of size z) instead of S[(i-z+1)..i].
endpos represents the index after the last character in the substring. Note that for variable-length encodings such as UTF-8 , UTF-16 or Shift-JIS , it can be necessary to remove string positions at the end, in order to avoid invalid strings.
C# 3.0 introduced type inference, allowing the type specifier of a variable declaration to be replaced by the keyword var, if its actual type can be statically determined from the initializer. This reduces repetition, especially for types with multiple generic type-parameters , and adheres more closely to the DRY principle.
In computer science, an FM-index is a compressed full-text substring index based on the Burrows–Wheeler transform, with some similarities to the suffix array.It was created by Paolo Ferragina and Giovanni Manzini, [1] who describe it as an opportunistic data structure as it allows compression of the input text while still permitting fast substring queries.
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A prefix of S is a substring S[1..i] for some i in range [1, l], where l is the length of S. A suffix of S is a substring S[i..l] for some i in range [1, l], where l is the length of S. An alignment of P to T is an index k in T such that the last character of P is aligned with index k of T.
Finding the longest repeated substring; Finding the longest common substring; Finding the longest palindrome in a string; Suffix trees are often used in bioinformatics applications, searching for patterns in DNA or protein sequences (which can be viewed as long strings of characters). The ability to search efficiently with mismatches might be ...