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The CVIP Toolbox contains library functions for use in MATLAB. It includes arithmetic and logic functions, banding, coloring, conversion of image files, edge/line detection, geometry , histograms , mapping, morphological functions, noise filters, objective fidelity metrics, pattern classification and classification algorithms, segmentation ...
ilastik [1] is a user-friendly free open source software for image classification and segmentation. No previous experience in image processing is required to run the software. Since 2018 ilastik is further developed and maintained by Anna Kreshuk's group at European Molecular Biology Laboratory.
Elastix is an image registration toolbox built upon the Insight Segmentation and Registration Toolkit (ITK). [2] It is entirely open-source and provides a wide range of algorithms employed in image registration problems. Its components are designed to be modular to ease a fast and reliable creation of various registration pipelines tailored for ...
IMOD includes over 180 command line programs listed here and three main GUI programs: . 3dmod - IMOD's main GUI used to view and segment images and 3D vector models.; Midas - A program used to align images over the top of each other, typically to apply fine adjustments after automatic cross-correlation.
Manual segmentation ITK-SNAP provides tools for manual delineation of anatomical structures in images. Labeling can take place in all three orthogonal cut planes and results can be visualized as a three-dimensional rendering. This makes it easier to ensure that the segmentation maintains reasonable shape in 3D. Automatic segmentation
Split and merge segmentation is an image processing technique used to segment an image. The image is successively split into quadrants based on a homogeneity criterion and similar regions are merged to create the segmented result.
Because CellProfiler is a free, open-source project, anyone can develop their own image processing algorithms as a new module for CellProfiler and contribute it to the project. [18] The CellProfiler website contains a forum for discussion where new users can have their questions answered, usually by the creators of the project.
Fiji is most popular in the life sciences community, where the 3D Viewer [12] helps visualizing data obtained through light microscopy, and for which Fiji provides registration, [13] segmentation, and other advanced image processing algorithms.