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CuPy is an open source library for GPU-accelerated computing with Python programming language, providing support for multi-dimensional arrays, sparse matrices, and a variety of numerical algorithms implemented on top of them. [3] CuPy shares the same API set as NumPy and SciPy, allowing it to be a drop-in replacement to run NumPy/SciPy code on GPU.
An unpublished computational program written in Pascal called Abra inspired this open-source software. Abra was originally designed for physicists to compute problems present in quantum mechanics. Kespers Peeters then decided to write a similar program in C computing language rather than Pascal, which he renamed Cadabra. However, Cadabra has ...
Most often the elements in PWMs are calculated as log odds. That is, the elements of a PPM are transformed using a background model so that: , = (, /). describes how an element in the PWM (left), ,, can be calculated. The simplest background model assumes that each letter appears equally frequently in the dataset.
In mathematics, computer science and especially graph theory, a distance matrix is a square matrix (two-dimensional array) containing the distances, taken pairwise, between the elements of a set. [1] Depending upon the application involved, the distance being used to define this matrix may or may not be a metric .
The straightforward multiplication of a matrix that is X × Y by a matrix that is Y × Z requires XYZ ordinary multiplications and X(Y − 1)Z ordinary additions. In this context, it is typical to use the number of ordinary multiplications as a measure of the runtime complexity. If A is a 10 × 30 matrix, B is a 30 × 5 matrix, and C is a 5 × ...
The identity matrices (which are the square matrices whose entries are zero outside of the main diagonal and 1 on the main diagonal) are identity elements of the matrix product. It follows that the n × n matrices over a ring form a ring, which is noncommutative except if n = 1 and the ground ring is commutative.
In mathematics, a Euclidean distance matrix is an n×n matrix representing the spacing of a set of n points in Euclidean space. For points x 1 , x 2 , … , x n {\displaystyle x_{1},x_{2},\ldots ,x_{n}} in k -dimensional space ℝ k , the elements of their Euclidean distance matrix A are given by squares of distances between them.
For instance, the main diagonal of the 4×4 matrix above contains the elements a 11 = 9, a 22 = 11, a 33 = 4, a 44 = 10. In mathematics, a square matrix is a matrix with the same number of rows and columns. An n-by-n matrix is known as a square matrix of order . Any two square matrices of the same order can be added and multiplied.