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  2. DNA and RNA codon tables - Wikipedia

    en.wikipedia.org/wiki/DNA_and_RNA_codon_tables

    The genetic code was once believed to be universal: [20] a codon would code for the same amino acid regardless of the organism or source. However, it is now agreed that the genetic code evolves, [21] resulting in discrepancies in how a codon is translated depending on the genetic source.

  3. List of genetic codes - Wikipedia

    en.wikipedia.org/wiki/List_of_genetic_codes

    Four novel alternative genetic codes were discovered in bacterial genomes by Shulgina and Eddy using their codon assignment software Codetta, and validated by analysis of tRNA anticodons and identity elements; [3] these codes are not currently adopted at NCBI, but are numbered here 34-37, and specified in the table below. The standard code

  4. Template:Codon table - Wikipedia

    en.wikipedia.org/wiki/Template:Codon_table

    This is the standard or universal genetic code. This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil).

  5. Genetic code - Wikipedia

    en.wikipedia.org/wiki/Genetic_code

    Even models are proposed that predict "entry points" for synthetic amino acid invasion of the genetic code. [21] Since 2001, 40 non-natural amino acids have been added into proteins by creating a unique codon (recoding) and a corresponding transfer-RNA:aminoacyl – tRNA-synthetase pair to encode it with diverse physicochemical and biological ...

  6. Amino acid - Wikipedia

    en.wikipedia.org/wiki/Amino_acid

    The 20 amino acids that are encoded directly by the codons of the universal genetic code are called standard or canonical amino acids. A modified form of methionine ( N -formylmethionine ) is often incorporated in place of methionine as the initial amino acid of proteins in bacteria, mitochondria and plastids (including chloroplasts).

  7. Synonymous substitution - Wikipedia

    en.wikipedia.org/wiki/Synonymous_substitution

    Protein translation involves a set of twenty amino acids.Each of these amino acids is coded for by a sequence of three DNA base pairs called a codon.Because there are 64 possible codons, but only 20-22 encoded amino acids (in nature) and a stop signal (i.e. up to three codons that do not code for any amino acid and are known as stop codons, indicating that translation should stop), some amino ...

  8. T-REX (web server) - Wikipedia

    en.wikipedia.org/wiki/T-REX_(web_server)

    The following popular substitution models of DNA and amino acids evolution, allowing for estimating evolutionary distances from sequence data, have been included to T-REX: Uncorrected distance, Jukes-Cantor (Jukes and Cantor 1969), K80 – 2 parameters (Kimura 1980), T92 (Tamura 1992), Tajima-Nei (Tajima and Nei 1984), Jin-Nei gamma (Jin and ...

  9. Expanded genetic code - Wikipedia

    en.wikipedia.org/wiki/Expanded_genetic_code

    There must not be crosstalk between the new tRNA/synthase pair and the existing tRNA/synthase molecules, only with the ribosomes. An expanded genetic code is an artificially modified genetic code in which one or more specific codons have been re-allocated to encode an amino acid that is not among the 22 common naturally-encoded proteinogenic amino acids.

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