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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth
Software suite to search and cluster huge sequence sets. Similar sensitivity to BLAST and PSI-BLAST but orders of magnitude faster: Protein: Steinegger M, Mirdita M, Galiez C, Söding J [10] 2017 USEARCH Ultra-fast sequence analysis tool: Both: Edgar, R. C. (2010). "Search and clustering orders of magnitude faster than BLAST". Bioinformatics.
This is a list of notable software systems that are used for visualizing macromolecules. ... structure-based sequence alignment, automatic sequence-structure ...
This list of structural comparison and alignment software is a compilation of ... 2024 ARTEM [2] [3 ... Protein structure alignment and visualization of structural ...
tomviz is an open source software platform for reproducible volumetric visualization and data processing. [1] The platform is designed for a wide range scientific applications but is especially tailored to high-resolution electron tomography, with features that allow alignment and reconstruction of nanoscale materials.
Component-based data mining and machine learning software suite written in C++, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting Linux, macOS, Windows: GPL: University of Ljubljana: SAMtools
This application performs multiple and pairwise sequence alignments, provides alignment editing, and generates phylogenetic trees. Maximum Likelihood (RAxML) and Neighbor-Joining DNASTAR: Mesquite: Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
List of proprietary bioinformatics software; List of open-source bioinformatics software; Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on: Sequence analysis software. List of sequence alignment software; List of alignment visualization software; Alignment-free sequence analysis