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The journal Nucleic Acids Research regularly publishes special issues on biological databases and has a list of such databases. The 2018 issue has a list of about 180 such databases and updates to previously described databases. [2] Omics Discovery Index can be used to browse and search several biological databases.
The Database Issue of NAR is freely available, and categorizes many of the public biological databases. A companion database to the issue called the Online Molecular Biology Database Collection lists 1,380 online databases. [15] Other collections of databases exist such as MetaBase and the Bioinformatics Links Collection. [16] [17]
Bioinformatics uses biology, chemistry, physics, computer science, data science, computer programming, information engineering, mathematics and statistics to analyze and interpret biological data. The process of analyzing and interpreting data can sometimes be referred to as computational biology , however this distinction between the two terms ...
European Molecular Biology Laboratory substances in patents patent text "SureChEMBL". SwissLipids Swiss Institute of Bioinformatics: lipids SLM: "SwissLipids". TDR Targets: Tropical Disease Research Trypanosomatics Laboratory drugs and targets "TDR Targets". 2,000,000 TTD Therapeutic Targets Database Zhejiang University: drugs and targets
Biological data has also been difficult to define, as bioinformatics is a wide-encompassing field. Further, the question of what constitutes as being a living organism has been contentious, as "alive" represents a nebulous term that encompasses molecular evolution, biological modeling, biophysics, and systems biology.
Whereas traditional bioinformatics is a wide subject it has a large focus on molecular biology, pharmaceutical bioinformatics more specifically targets chemical-biological interaction and exploratory focus of chemical and biological interactors using e.g. cheminformatics and chemometrics methods.
Bioinformatics and computational biology are interdisciplinary fields of research, development and application of algorithms, computational and statistical methods for management and analysis of biological data, and for solving basic biological problems.
Name Description Data type Author(s) Year Cytoscape: Open source software platform for visualizing complex biological networks [57] Systems biology: Cytoscape Team: July 2002 FigTree Java tree viewer able to read multiple tree file formats, color branches, and produce vector artwork: Phylogenetic tree: Andrew Rambaut: Nov 6, 2006 Interactive ...