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ACD/ChemSketch allows for both basic structure drawing and importation of 3D and 2D .MDL files from other molecular modelling programs. ChemSketch has been favorably compared to other molecular modelling software, especially ChemDraw, based on its ability to display a wide range of structural components and the ease of creating complex structures quickly.
There is a free, open source program called BKchem . You can save the following configuration files to ~/.bkchem under Linux or C:\Documents and Settings\{username}\application data\bkchem ( XP ) or C:\Users\{username}\application data\bkchem ( Vista / Windows 7 ) to get configuration according to Wikipedia's Manual of Style.
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According to the Wikipedia, Inkscape is an open-source vector graphics editor, that has incorporated the bitmap-tracing functionality of Potrace.I will try to use this software to make chemical SVGs in conjuction with ChemSketch, ISIS, and ChemDraw, but will not have time to do it until Sunday at the earliest, and if anyone beats me to it, they are welcome to do so.
ChemWindow is a chemical structure drawing molecule editor and publishing program now published by John Wiley & Sons as of 2020, [1] originally developed by Bio-Rad Laboratories, Inc. [2] [3] It was first developed by SoftShell International in the 1990s. [4]
Spartan is a molecular modelling and computational chemistry application from Wavefunction. [2] It contains code for molecular mechanics, semi-empirical methods, ab initio models, [3] density functional models, [4] post-Hartree–Fock models, [5] and thermochemical recipes including G3(MP2) [6] and T1. [7]
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