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Spark Core is the foundation of the overall project. It provides distributed task dispatching, scheduling, and basic I/O functionalities, exposed through an application programming interface (for Java, Python, Scala, .NET [16] and R) centered on the RDD abstraction (the Java API is available for other JVM languages, but is also usable for some other non-JVM languages that can connect to the ...
Possible uses include extracting a subset of data into a new file, converting between BAM and SAM formats, and just looking at the raw file contents. The order of extracted reads is preserved. sort The sort command sorts a BAM file based on its position in the reference, as determined by its alignment. The element + coordinate in the reference ...
MapReduce is a programming model and an associated implementation for processing and generating big data sets with a parallel and distributed algorithm on a cluster. [1] [2] [3]A MapReduce program is composed of a map procedure, which performs filtering and sorting (such as sorting students by first name into queues, one queue for each name), and a reduce method, which performs a summary ...
Here the first sort is done using column 2. -k2,2n specifies sorting on the key starting and ending with column 2, and sorting numerically. If -k2 is used instead, the sort key would begin at column 2 and extend to the end of the line, spanning all the fields in between. -k1,1 dictates breaking ties using the value in column 1, sorting ...
Multiple column sorting was commonly done by first sorting the least significant column, then proceeding, column by column, to the most significant column. This is called a least significant digit radix sort. Numeric columns have one punch in rows 0-9, possibly a sign overpunch in rows 11-12, and can be sorted in a single pass through the sorter.
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The sort-merge join (also known as merge join) is a join algorithm and is used in the implementation of a relational database management system. The basic problem of a join algorithm is to find, for each distinct value of the join attribute, the set of tuples in each relation which display that value.